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Grade 9 · Lesson 9 of 12 · about 12 min

Cycling of Matter: Water, Carbon, Nitrogen and Phosphorus

How matter is reused in cycles: reservoirs, sources and sinks, and the water, carbon, nitrogen and phosphorus cycles.

🎯 By the end of this lesson

  • Students should be able to contrast the flow of energy with the cycling of matter.
  • Students should be able to define reservoir, source and sink and classify examples.
  • Students should be able to describe the main steps of the carbon cycle.
  • Students should be able to describe nitrogen fixation, ammonification, nitrification and denitrification and name the organisms involved.
  • Students should be able to describe the phosphorus cycle and explain why it has no major gas phase.
  • Students should be able to explain the role of decomposers in cycles.
  • Students should be able to compare the four cycles in a table and trace one atom through a diagram.

1Recycling on a planetary scale

The atoms in a person's body are not new. The carbon in a muscle was once part of the carbon dioxide in the air, and before that it may have been in a leaf, a fossil, or a shell on the seafloor. The nitrogen in each protein was recently in the soil, and the phosphorus in each bone was recently in a rock. Earth receives a steady supply of energy from the Sun, but the matter that living things need has to be reused over and over.

The curriculum names this as the second part of its Big Idea: the biosphere, geosphere, hydrosphere and atmosphere are interconnected, as matter cycles and energy flows through them. The examples specified are the water, nitrogen, carbon and phosphorus cycles.

Key idea

Energy flows through an ecosystem in one direction and leaves as heat. Matter does not leave: atoms are passed from one reservoir to another in cycles. Cycles that involve living things, rocks, water and air are called biogeochemical cycles.

2Reservoirs, sources and sinks

A reservoir is a place where matter is stored, such as the atmosphere, the ocean, soil, living things or rock. Matter moves between reservoirs through processes such as photosynthesis, evaporation or weathering. Two words from the curriculum describe the direction of flow.

  • A source releases a substance into a reservoir (for example, a volcano or a car releasing carbon dioxide into the air).
  • A sink takes a substance out of a reservoir and stores it (for example, plants absorbing carbon dioxide from the air).

The same thing can be a source or a sink at different times. OpenStax uses the word reservoir rather than “sink”, and notes that reservoirs hold matter for very different lengths of time: from about a week in living organisms to tens of thousands of years in the deep oceans and ice. The next lesson explores how people change sources and sinks.

How long matter stays in a reservoir (water as an example)Living things (about 1 week)Atmosphere (about 1.5 weeks)Rivers (about 2 weeks)Glaciers (1,000-10,000 years)Oceans (about 4,000 years)0.01 yr0.1 yr1 yr10 yr1001,00010,000 yr
Residence time of water in different reservoirs (log scale). Each step to the right is ten times longer.
Common misconception

“Matter is used up by living things.” Atoms are not destroyed when they are used. A carbon atom in sugar can become part of a carbon dioxide molecule after respiration, and may be taken up by another plant later. Matter changes form and location, but it is conserved.

3The carbon cycle

Carbon is the backbone of the molecules of life: sugars, fats, proteins and DNA all contain it. Its movement links air, water, rock and living things.

  1. Photosynthesis removes carbon dioxide. Photosynthetic organisms use carbon dioxide from the air (or dissolved carbon in water) to build energy-rich compounds, and release oxygen.
  2. Feeding passes carbon along. Heterotrophs eat these compounds. The carbon becomes part of their bodies.
  3. Respiration returns carbon dioxide. Organisms use aerobic respiration, which consumes oxygen and releases carbon dioxide to the air.
  4. Decomposition. Decomposers return carbon from dead organisms to the soil, and eventually to the air as carbon dioxide.
  5. The ocean. Carbon dioxide dissolves in water and forms carbonic acid, which breaks down into bicarbonate and carbonate ions. Over 90% of the carbon in the oceans is bicarbonate. Marine organisms combine it with calcium to build calcium carbonate shells. Over time, shells form limestone, the largest carbon reservoir on Earth.
  6. Fossil fuels. Plant remains that decompose without oxygen over millions of years become fossil fuels. They form far more slowly than they are used, so they are non-renewable.
  7. Geologic return. Volcanoes and hydrothermal vents release carbon dioxide. Subduction of the ocean floor carries carbon deep into Earth, where it can eventually return.
The carbon cycleAtmosphere: carbon dioxide (CO2)Producers(plants, algae)Consumers(animals)Ocean(dissolved CO2,shells)Decomposersand soilFossil fuels(underground)photosynthesisrespirationburningDecomposer respiration also returns CO2 to the air (left-hand arrow).
The carbon cycle: photosynthesis removes carbon dioxide from the air; respiration, decay and burning fuels return it.
Worked example

Trace one carbon atom: A carbon atom in a molecule of CO2 in the air is absorbed by a grass leaf during photosynthesis and becomes part of a sugar. A rabbit eats the grass, and the atom becomes part of the rabbit's body. The rabbit breathes out CO2 during respiration, and the atom is back in the air. Alternatively, if the rabbit dies and a decomposer breaks down the body, the atom is released as CO2 by the decomposer's respiration. In either case, the atom moves through: atmosphere → producer → consumer → atmosphere.

For a link to the biological side of this cycle, see How photosynthesis works.

4The nitrogen cycle

Nitrogen is essential for proteins and DNA. It makes up about 78% of the atmosphere as nitrogen gas (N2), but plants and animals cannot use this form directly. Bacteria do the vital conversions.

  1. Nitrogen fixation. Certain bacteria convert nitrogen gas into forms that living things can use. They include cyanobacteria, Rhizobium bacteria that live in nodules on the roots of legumes (such as peas and beans), and free-living soil bacteria.
  2. Assimilation. Plants take up fixed nitrogen from the soil and build it into proteins. Animals get nitrogen by eating plants or other animals. Nitrogen availability often limits growth.
  3. Ammonification. Bacteria and fungi convert nitrogen-containing wastes and dead organisms into ammonium (NH4+).
  4. Nitrification. Soil bacteria convert ammonium into nitrite and then into nitrate, a form that plants readily take up.
  5. Denitrification. Other bacteria convert nitrate back into nitrogen gas, which returns to the atmosphere.
The nitrogen cycleAtmosphere: nitrogen gas (N2)Soil: ammonium(NH4+)Soil: nitrate(NO3-)Living things(plants, animals)Decomposers(bacteria, fungi)fixationnitrification (bacteria)denitrificationuptake by plantsammonificationLiving things die and are broken down by decomposers
The nitrogen cycle depends on different groups of bacteria at nearly every step.
Common misconception

“Plants take nitrogen from the air because the air is 78% nitrogen.” Plants cannot use N2 gas. They need nitrogen that has been fixed into compounds such as ammonium and nitrate, and bacteria carry out this step.

5The phosphorus cycle

Phosphorus is a key part of DNA and other nucleic acids, of cell membranes (phospholipids) and of bone (as calcium phosphate). In nature, it is found as the phosphate ion (PO43−). Phosphorus often limits growth in aquatic ecosystems.

The phosphorus cycle differs from the carbon and nitrogen cycles in an important way: it has no major gas phase. It moves mostly through rock, soil, water and living things (although dust and volcanic ash can carry small amounts through the air).

  1. Weathering. Phosphate in rock (much of it from ancient ocean sediments) is slowly released into soil and water as the rock weathers.
  2. Uptake. Plants absorb phosphate. Animals obtain it from food. Decomposers return it to the soil when organisms die.
  3. Runoff. Surface runoff, groundwater and rivers carry phosphate to lakes and the ocean, where it enters food webs or settles as sediment.
  4. Uplift. Over geologic time, sediments are uplifted and become land again.
The phosphorus cyclePhosphate rock(and sediments)Soil and water:phosphate (PO4)Plants, thenanimalsOcean waterand lifeOcean sedimentsFertilizer, sewageweatheringuptakedecayrunoff and riverssettlesuplift over millions of yearsSmall amounts also travel as dust and ash, but the main flow is rock, water and sediment.
The phosphorus cycle is slow and has no major gas phase; fertilizer and sewage add extra phosphate.

Phosphate moves very slowly. The average phosphate ion stays in the ocean for 20 000 to 100 000 years. This explains why a human-caused change in phosphorus can last a long time.

The water cycle in the context of matter cycles

The water cycle was described in the lesson on solar radiation. In the context of matter cycles, it has a second role: it is the transport system for other cycles. Rain and runoff carry carbon, nitrogen, phosphorus and sulfur from land to water. Water's residence times differ among reservoirs: about 1.5 weeks in the atmosphere, about 2 weeks in rivers and about 4000 years in the oceans, as shown in the chart.

6Comparing the cycles

FeatureWaterCarbonNitrogenPhosphorus
Main reservoirsOceans, ice, groundwater, atmosphereLimestone and sediments, oceans, fossil fuels, soil, atmosphereAtmosphere (N2 gas), soil, living thingsRock and ocean sediments, soil, water
Gas phase important?Yes (water vapour)Yes (CO2)Yes (N2)No (mostly)
What drives it or does the workSolar energy and gravityPhotosynthesis, respiration, burning, geologyBacteriaWeathering, runoff, geologic uplift
Form used by organismsLiquid waterCO2 and organic compoundsAmmonium, nitrate (not N2)Phosphate
SpeedFast to very slow depending on reservoirFast (biological) and very slow (geological)ModerateVery slow
Worked example

Classify each as a source or a sink of carbon dioxide for the atmosphere, and explain: (a) a growing forest, (b) a power plant burning coal, (c) a volcano, (d) the ocean absorbing CO2.

(a) A sink: trees remove CO2 from the air by photosynthesis and store the carbon in their bodies. (b) A source: burning fossil fuels combines the carbon with oxygen to form CO2. (c) A source: volcanoes release CO2. (d) A sink: CO2 dissolves in the water and is stored in the form of dissolved ions and in shells.

Some things can be both. A forest that grows is a sink, but a forest that burns or rots is a source.

Decomposers: the recycling crew

None of the cycles would work without decomposers, the bacteria and fungi that break down dead organisms and wastes. In the carbon cycle, decomposers release carbon dioxide from dead material. In the nitrogen cycle, they carry out ammonification, converting nitrogen-rich wastes and remains into ammonium. In the phosphorus cycle, they return phosphate from dead organisms to the soil. Without decomposers, nutrients would stay locked in dead material and producers would run short.

The role of decomposers is a good reason to think of an ecosystem as a loop and not as a line. Producers build living matter from simple substances; consumers pass it along; decomposers turn it back into the simple substances that producers can use again.

Energy flow and matter cycling compared

FeatureEnergyMatter
DirectionOne way: Sun to producers to consumers to heatCircular: reservoir to organism to reservoir
SourceContinuously supplied by the SunReused; the same atoms pass around
What happens at each stepMuch is lost as heatChanges form (for example, CO2 to sugar to CO2)
Role of decomposersRelease the remaining energy as heatReturn nutrients to the soil and air

How the cycles work together: a crop field

A single field of plants depends on all four cycles at once, and the cycles depend on one another.

Worked example

List the cycles involved in the growth of a bean plant and identify the reservoir each material comes from.

  • Water: rain and groundwater supply water, which the sun later evaporates from the leaves and soil.
  • Carbon: carbon dioxide from the atmosphere is used in photosynthesis to build sugars and the plant's other carbon compounds.
  • Nitrogen: Rhizobium bacteria in the root nodules fix nitrogen gas from the air into a form the plant can use; the plant builds proteins from it.
  • Phosphorus: phosphate released by the weathering of rock and by decomposition of earlier plants is absorbed through the roots.

When the plant dies, decomposers return carbon, nitrogen and phosphorus to the air and soil, ready to be taken up again.

Reading cycle diagrams

Cycle diagrams can look confusing. A few habits make them easier to read.

  1. Find the reservoirs first. These are the boxes: places where matter is stored.
  2. Read the arrows as processes. Each arrow is labelled with a process such as photosynthesis, runoff or nitrification.
  3. Trace one atom. Follow a single atom through a full loop and note which arrows it takes.
  4. Look for the fast and slow paths. In the carbon cycle, the loop through living things takes a short time, while the loop through limestone and fossil fuels takes millions of years.
  5. Find where people interfere. Burning fossil fuels, adding fertilizer and clearing forests all change a flow.

Practice question: In the nitrogen diagram, which arrow would stop if all denitrifying bacteria were removed, and what would the result be over time? The arrow from nitrate back to nitrogen gas would stop, so nitrogen would stay in the soil and water as nitrate instead of returning to the air, and the reservoir in the atmosphere would slowly receive less nitrogen.

7Why cycles matter

  • Cycles keep nutrients available for living things, without needing new matter to arrive from space.
  • Different cycles are linked: water carries nutrients, nitrogen and phosphorus limit plant growth, and carbon links living things to the air and climate.
  • Cycles run at different speeds. When people add matter to a fast cycle, the effects can be quick. When people add matter to a slow cycle (like phosphorus), the effects can last for a very long time.

Next, the effects of human activities on these cycles: climate change, deforestation, agriculture, and the build-up of pollutants in food chains.

🔑Key terms

biogeochemical cycleA pathway by which a substance moves through living things, air, water and rock.
reservoirA place where matter is stored, such as the ocean or the atmosphere.
sourceA process or place that releases a substance into a reservoir.
sinkA process or place that removes a substance from a reservoir and stores it.
respirationProcess in which organisms use oxygen to release energy and give off carbon dioxide.
fossil fuelA fuel formed over millions of years from the remains of living things.
nitrogen fixationConversion of nitrogen gas into usable forms by certain bacteria.
nitrificationConversion of ammonium to nitrite and then nitrate by bacteria.
denitrificationConversion of nitrate back to nitrogen gas by bacteria.
ammonificationConversion of nitrogen wastes and dead remains into ammonium.
weatheringThe breakdown of rock that releases minerals such as phosphate.
decomposerA bacterium or fungus that breaks down dead material and recycles nutrients.

?Quick check

Try each question first, then reveal the answer.

1. Explain the difference between energy flow and matter cycling in an ecosystem.

2. Name two processes that remove carbon dioxide from the air and two that add it.

3. Why can plants not use nitrogen gas, and which organisms solve the problem?

4. Put these in order: nitrate, nitrogen gas, ammonium, nitrite.

5. Why is the phosphorus cycle much slower than the carbon cycle?

6. Classify as a source or sink of carbon dioxide for the atmosphere: a growing forest, a coal power plant, the ocean.

7. What would happen to nutrient cycling if all decomposers disappeared?

8. Describe the route of a carbon atom from the air into a rabbit and back to the air.

BC curriculum content covered in this lesson
  • Matter cycles, e.g., water, nitrogen, carbon, phosphorus
  • Big Idea: matter cycles and energy flows through the biosphere, geosphere, hydrosphere and atmosphere
  • Sources and sinks (introduction)

References

  1. BC Ministry of Education and Child Care. Science 9 curriculum (Big Ideas, Content, Curricular Competencies). Accessed October 7, 2026.
  2. OpenStax. Biology 2e, 46.3 Biogeochemical Cycles. Accessed October 7, 2026.
  3. OpenStax. Biology 2e, 46.2 Energy Flow through Ecosystems. Accessed October 7, 2026.
  4. OpenStax. Biology 2e, 8.1 Overview of Photosynthesis. Accessed October 7, 2026.
  5. US Geological Survey. The water cycle (Water Science School). Accessed October 7, 2026.
  6. OpenStax. Biology 2e, 44.5 Climate and the Effects of Global Climate Change. Accessed October 7, 2026.

These lessons follow the content areas listed in the British Columbia curriculum. They are study material written for this site and are not an official document. The official curriculum is the authority on what each course requires. Lessons are general education, not medical advice.